IMI 116026 HARMONY; IMI 945406 HARMONY PLUS - HARMONY Big Data Platform

01/02/2024
16/05/2025
Data source
Human
Cancer registry
Other
Registration with healthcare system
Access and validation

Governance details

Documents or webpages that describe the overall governance of the data source and processes and procedures for data capture and management, data quality check and validation results (governing data access or utilisation for research purposes).
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Biospecimen access

Are biospecimens available in the data source (e.g., tissue samples)?

No

Access to subject details

Can individual patients/practitioners/practices included in the data source be contacted?

Yes

Description of data collection

The data provider prepares the “Data Dictionary” that describes the data to be submitted, listing and defining all fields with all possible values. Common data dictionaries exist in some HMs, to facilitate this process. The data providers then prepare the data itself, ensuring all fields are fully defined, and subjecting it to a first stage of pseudonymisation. The pseudonymized data are submitted through a Trusted Third Party (TTP), following required file names and formats. The TTP takes the data through another pseudonymisation process before uploading to the HARMONY Platform. Then, a Data Quality Supervision Committee (DQSC) verify and check the quality of the data from a clinical and technical point of view to guarantee compliance with different quality levels. After pseudonymisation and quality control, the data are standardised to a common model to address the heterogeneity of incoming data from different sources: OMOP CDM and custom concepts created by HARMONY when they are absent in OMOP. The approach consists of transforming the information from the origin databases into a common representation in terms of vocabularies, terminologies, or coding schemes. If necessary, the data provider and clinicians will validate the harmonisation process to ensure completeness and trustworthiness of the data. After harmonisation is complete, the data are deposited in the HARMONY Platform.
Custom HARMONY OMOP concepts are subject to validadation from OHDSI relevant workgroups (https://www.ohdsi.org/workgroups/)
Currently the HARMONY Platform is mainly based on secondary used of anonymized data and not includes EHR. Therefore, there is not an specific way to creating a record (pregunta 34), to register a person (pregunta 35) o to de-register a person (pregunta 36) and it is not linked to another data sources (pregunta 37). Pilot projects to include EHR information are foreseen in Q4 2023.
Data source linkage

Linkage

Is the data source described created by the linkage of other data sources (prelinked data source) and/or can the data source be linked to other data source on an ad-hoc basis?

No
Data management specifications that apply for the data source

Data source refresh

Yearly

Informed consent for use of data for research

Informed consent, other

Possibility of data validation

Can validity of the data in the data source be verified (e.g., access to original medical charts)?

Yes

Data source preservation

Are records preserved in the data source indefinitely?

No

Data source preservation length

10 years

Approval for publication

Is an approval needed for publishing the results of a study using the data source?

Yes

Data source last refresh

Common Data Model (CDM) mapping

CDM mapping

Has the data source been converted (ETL-ed) to a common data model?

Yes

CDM Mappings

Data source ETL CDM version

5.3.2001

Data source ETL frequency

0,03 months

Data source ETL status

In progress